Section outline
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CSE115: Introduction to Biology and Chemistry for Computation
Course information:
Course Code: CSE115
Course Title: Introduction to Biology and Chemistry for Computation
Program: B.Sc in Computer Science and Engineering (CSE)
Faculty: Faculty of Science and Information Technology (FSIT)
Semester: Summer
Year: 2022
Credit: 2Course Level: L1T1Course teacher information:Md Mamun AliLecturer, Department of Computer Science and EngineeringDaffodil International UniversityMobile: 01631863308Email: mamun35-274@diu.edu.bdCourse SummaryIn this course, you will learn how chemistry and biology are used in computer science and engineering. Numerous computer-based applications are used in biology and chemistry, and the number is growing day by day. You learn about several computing methods which are used in biology and chemistry. You will also get a clear idea of the jobs in this sector. -
1. Computational Chemistry
2. An Introduction to Bioinformatics Algorithm
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Students mustMark as done
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CLO1:
Understanding the implications, impacts, and benefits of Chemistry and Biology for Computation.
CLO2:
Learn the basics of Molecular and Cellular Biology.
CLO3:
Differentiate among different Computational Chemistry methods.
CLO4:
Implement Different Algorithms related to Computational Biology.
CLO5:
Be familiar with the importance of computation in Chemical Industries.
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Students mustMark as done
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Contents
Lecture 01: Introduction to Computational Chemistry
Lecture 02: Role of chemistry in computer science & engineering
- Uses and effects of chemistry
- Benefits of Chemistry
- Applications of Chemistry
Lecture 03: Importance of Computation in Chemical Industries
- DCS (distributed control system)
- Fertilizer
- Water Treatment
- Chemical Plant
- Chromatography
- Bioinformatics
Expected Outcome
Students will know about the uses of chemistry and biology in computer science and engineering.
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Students mustMark as done
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Content
Lecture 01: Molecular and Cellular Biology
- Cell
- Nucleic Acids
- Deoxyribonucleic Acid
- Ribonucleic Acid
- DNA Replication
- RNA Types
Lecture 02: DNA Sequencing Techniques
- DNA Sequencing
- First Gen Sequencing
- Second / Next Gen Sequencing
- Third / Next-Next Gen Sequencing
- Miscellaneous Terms
Expected OutcomeStudents will be able to know about DNA Sequencing, and three generations of Sequencing.Quiz 1Full marks: 15Syllabus: Weak 1 and 2-
Students mustMark as done
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Content
Mid Term Exam
Syllabus: Weak 1 and 2
Full marks: 25
Date: 2 June 2022
Time: 1 hour and 30 minutes.
Best wishes!
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Content
Lecture 01: Computational Chemistry Methods
- Ab Initio Methods
- Density Functional Methods
- Semi-empirical Methods
- Software Packages
Lecture 02: Sequence Alignment
- Sequence Alignment Methods
- Local & Global Alignment Basics
Expected OutcomeStudents will know more about several methods of computational chemistry and sequence alignment.-
Students mustMark as done
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Content
Lecture 01: Gene Duplication & Read Mapping
- Mutation
- Gene Duplication
- Read Mapping
Lecture 02: DNA Database Searching
- FASTA
Expected OutcomeStudents will know clearly about gene duplication, read mapping, and database searching.-
Students mustMark as done
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Review class on previous lectures, presentation, and assignment.
Final Examination
* After week 5, details information about the final examination will be found here.
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Opened: Sunday, 11 December 2022, 12:00 AMDue: Sunday, 18 December 2022, 12:00 AMStudents mustMark as done
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Opened: Wednesday, 21 December 2022, 12:00 AMDue: Wednesday, 28 December 2022, 12:00 AMStudents mustMark as done
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Opened: Wednesday, 21 December 2022, 12:00 AMDue: Wednesday, 28 December 2022, 12:00 AMStudents mustMark as done
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