DIU-BLC
Introduction to Biology and Chemistry for Computation (Fall 2022)
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Lecture 7 Gene Duplication and Read Mapping
Welcome to Introduction to Biology and Chemistry for Computation Theory Course
Announcements
Announcements
CO-PO, Course Outcome and Contents with Completion Plan
Book References
Assignment no:01
Class Test :03
Assignment :01
Presentation
Week 1 (Lecture 1.1, 1.2 & 1.3)
Lecture 1.1, 1.2 & 1.3
Video Lecture: Introduction to Computational Chemistry
Video Lecture: Introduction to Computational Biology
Discussion Forum
Understanding Bioinformatics
Demo Quiz
First Demo Quiz CSE 115
Week 2 (Lecture 2.1 and Lecture 2.2)
Lecture 2.1
Video Lecture 2.1 Role of chemistry in computer science & engineering
Lecture 2.2 Presentation Slide
Video Lecture 2.2 Molecular and Cellular Biology (DNA Replication)
Discussion Forum
Regarding DNA Replication
Week 3 (Lecture 3.1 and Lecture 3.2)
Presentation Slide on Lecture 3.1
Video Presentation of Lecture 3.1 DNA Sequencing (Sanger Method)
Presentation Slide on Lecture 3.2
Video Presentation on Lecture 3.2 DNA Sequencing (First, Second & Third Generation Sequencing)
Class Test/Quiz
Class/Quiz Test 2
Week 4 (Lecture 4.1 and Lecture 4.2)
Presentation Slide on Lecture 4.1
Video Presentation on Lecture 4.1 DNA Sequence Alignment (Needleman-Wunsch)
Video Presentation on Lecture 4.2 DNA Sequence Alignment (Smith-Waterman) Method
Week 5 (Lecture 5.1 and Lecture 5.2)
Presentation Slide on Lecture 5.1 & 5.2
Video Presentation on Lecture 5.1 Computational Chemistry Methods (Molecular Mechanics, Molecular Dynamics, Quantum Mechanics)
Video Presentation on Lecture 5.2 Quantum Mechanics, AB Initio Method, Hartree Fock, Density Functional Theory & Semi-Empirical Method
Week 6: Quiz/Class Test (Click Below to Start Quiz Test)
Quiz/Class Test
Week 6: Review Class
Attend Review Class
Week 6: Students Discussion & Forum
Discussion About Sequence Alignment Technique
Week 8 (Lecture 8)
Lecture 7 Gene Duplication and Read Mapping
Video Presentation on Lecture 7
Week 9 (Lecture 8 DNA Database Searching)
Lecture 8 DNA Database Searching
Video Presentation on Lecture 8: FASTA
Week 10 (Lecture 9 Importance of Computation in Chemical Industries)
Lecture 9 Importance of Computation in Chemical Industries
Video presentation on Lecture 9
Week 11 (Lecture 10: Computer graphics for Molecular modelling)
Class Lecture Slide on Lecture 10: Computer graphics for Molecular modelling
Video Presentation on Lecture 10 (Computer graphics for Molecular modelling)
Week 12 (Presentation and Assignment)
Week 13 (Review Class)
Week 14 (Final Exam)
Next
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Course Overview
Sections
Welcome to Introduction to Biology and Chemistry for Computation Theory Course
1
Announcements
Forum
Announcements
Forum
CO-PO, Course Outcome and Contents with Completion Plan
File
Book References
Page
Assignment no:01
Class Test :03
Quiz
Assignment :01
Presentation
Assignment
Week 1 (Lecture 1.1, 1.2 & 1.3)
2
Lecture 1.1, 1.2 & 1.3
Page
Video Lecture: Introduction to Computational Chemistry
Page
Video Lecture: Introduction to Computational Biology
Page
Discussion Forum
3
Understanding Bioinformatics
Forum
Demo Quiz
4
First Demo Quiz CSE 115
Week 2 (Lecture 2.1 and Lecture 2.2)
5
Lecture 2.1
Page
Video Lecture 2.1 Role of chemistry in computer science & engineering
Page
Lecture 2.2 Presentation Slide
Page
Video Lecture 2.2 Molecular and Cellular Biology (DNA Replication)
Page
Discussion Forum
6
Regarding DNA Replication
Forum
Week 3 (Lecture 3.1 and Lecture 3.2)
7
Presentation Slide on Lecture 3.1
Page
Video Presentation of Lecture 3.1 DNA Sequencing (Sanger Method)
Page
Presentation Slide on Lecture 3.2
Page
Video Presentation on Lecture 3.2 DNA Sequencing (First, Second & Third Generation Sequencing)
Page
Class Test/Quiz
8
Class/Quiz Test 2
Page
Week 4 (Lecture 4.1 and Lecture 4.2)
9
Presentation Slide on Lecture 4.1
Page
Video Presentation on Lecture 4.1 DNA Sequence Alignment (Needleman-Wunsch)
Page
Video Presentation on Lecture 4.2 DNA Sequence Alignment (Smith-Waterman) Method
Page
Week 5 (Lecture 5.1 and Lecture 5.2)
10
Presentation Slide on Lecture 5.1 & 5.2
Page
Video Presentation on Lecture 5.1 Computational Chemistry Methods (Molecular Mechanics, Molecular Dynamics, Quantum Mechanics)
Page
Video Presentation on Lecture 5.2 Quantum Mechanics, AB Initio Method, Hartree Fock, Density Functional Theory & Semi-Empirical Method
Page
Week 6: Quiz/Class Test (Click Below to Start Quiz Test)
11
Quiz/Class Test
Week 6: Review Class
12
Attend Review Class
Page
Week 6: Students Discussion & Forum
13
Discussion About Sequence Alignment Technique
Forum
Week 8 (Lecture 8)
14
Lecture 7 Gene Duplication and Read Mapping
Page
Video Presentation on Lecture 7
Page
Week 9 (Lecture 8 DNA Database Searching)
15
Lecture 8 DNA Database Searching
Page
Video Presentation on Lecture 8: FASTA
Page
Week 10 (Lecture 9 Importance of Computation in Chemical Industries)
16
Lecture 9 Importance of Computation in Chemical Industries
Page
Video presentation on Lecture 9
Page
Week 11 (Lecture 10: Computer graphics for Molecular modelling)
17
Class Lecture Slide on Lecture 10: Computer graphics for Molecular modelling
Page
Video Presentation on Lecture 10 (Computer graphics for Molecular modelling)
Page
Week 12 (Presentation and Assignment)
18
Week 13 (Review Class)
19
Week 14 (Final Exam)
20
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Introduction to Biology and Chemistry for Computation (Fall 2022)
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Courses
DIU
Faculty of Science and Information Technology
Computer Science and Engineering
CSE Fall 2022
CSE 115 (MUM-223)
Week 8 (Lecture 8)
Lecture 7 Gene Duplication and Read Mapping
Lecture 7 Gene Duplication and Read Mapping
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Last modified: Saturday, 19 March 2022, 5:09 PM
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Announcements
Announcements
CO-PO, Course Outcome and Contents with Completion Plan
Book References
Assignment no:01
Class Test :03
Assignment :01
Presentation
Lecture 1.1, 1.2 & 1.3
Video Lecture: Introduction to Computational Chemistry
Video Lecture: Introduction to Computational Biology
Understanding Bioinformatics
First Demo Quiz CSE 115
Lecture 2.1
Video Lecture 2.1 Role of chemistry in computer science & engineering
Lecture 2.2 Presentation Slide
Video Lecture 2.2 Molecular and Cellular Biology (DNA Replication)
Regarding DNA Replication
Presentation Slide on Lecture 3.1
Video Presentation of Lecture 3.1 DNA Sequencing (Sanger Method)
Presentation Slide on Lecture 3.2
Video Presentation on Lecture 3.2 DNA Sequencing (First, Second & Third Generation Sequencing)
Class/Quiz Test 2
Presentation Slide on Lecture 4.1
Video Presentation on Lecture 4.1 DNA Sequence Alignment (Needleman-Wunsch)
Video Presentation on Lecture 4.2 DNA Sequence Alignment (Smith-Waterman) Method
Presentation Slide on Lecture 5.1 & 5.2
Video Presentation on Lecture 5.1 Computational Chemistry Methods (Molecular Mechanics, Molecular Dynamics, Quantum Mechanics)
Video Presentation on Lecture 5.2 Quantum Mechanics, AB Initio Method, Hartree Fock, Density Functional Theory & Semi-Empirical Method
Quiz/Class Test
Attend Review Class
Discussion About Sequence Alignment Technique
Video Presentation on Lecture 7
Lecture 8 DNA Database Searching
Video Presentation on Lecture 8: FASTA
Lecture 9 Importance of Computation in Chemical Industries
Video presentation on Lecture 9
Class Lecture Slide on Lecture 10: Computer graphics for Molecular modelling
Video Presentation on Lecture 10 (Computer graphics for Molecular modelling)
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