DIU-BLC
Introduction to Biology and Chemistry_66-R(ABA)
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Lecture 6.2 DNA Database Searching
Welcome to Introduction to Biology and Chemistry for Computation Theory Course
Announcements
Announcements
CO-PO, Course Outcome and Contents with Completion Plan
Online Class google meeting Link
Important Tasks Along with Date
Week 1: Getting Introduced || Youtube Channel (Faisal Imran) Link || Career Related Discussion
Introduction to Biology & Chemistry for Computation by Faisal Imran
Discussion Forum
Understanding Bioinformatics
Week 1 & 2 (Lecture 1.1, 1.2 & 1.3)
Lecture 1.1, 1.2 & 1.3
Video Lecture: Introduction to Computational Chemistry
Video Lecture: Introduction to Computational Biology
Demo Quiz || Wait for Announcement
First Demo Quiz CSE 115
Week 3 (Lecture 2.1 and Lecture 2.2)
Lecture 2.1
Video Lecture 2.1 Role of chemistry in computer science & engineering
Lecture 2.2 Presentation Slide
Video Lecture 2.2 Molecular and Cellular Biology (DNA Replication)
Discussion Forum
Regarding DNA Replication
APPlication Name Assignment 1 | 65-E
Week 4 & 5 (Lecture 3.1 and Lecture 3.2)
Presentation Slide on Lecture 3.1
Video Presentation of Lecture 3.1 DNA Sequencing (Sanger Method)
Presentation Slide on Lecture 3.2
Video Presentation on Lecture 3.2 DNA Sequencing (First, Second & Third Generation Sequencing)
Quiz 1 | 65-E
Week 7 (Lecture 5.1 and Lecture 5.2)
Presentation Slide on Lecture 5.1 & 5.2
Video Presentation on Lecture 5.1 Computational Chemistry Methods (Molecular Mechanics, Molecular Dynamics, Quantum Mechanics)
Video Presentation on Lecture 5.2 Quantum Mechanics, AB Initio Method, Hartree Fock, Density Functional Theory & Semi-Empirical Method
Week 8: Students Discussion & Forum
Discussion About Sequence Alignment Technique
Week 9: Review Class & Mid-Term Examination
Attend Review Class
Week 10 (Lecture 4.1 and Lecture 4.2)
Presentation Slide on Lecture 4.1
Video Presentation on Lecture 4.1 DNA Sequence Alignment (Needleman-Wunsch)
Video Presentation on Lecture 4.2 DNA Sequence Alignment (Smith-Waterman) Method
Week 10 (Lecture 6.1)
Lecture 6.1 Gene Duplication and Read Mapping
Video Presentation on Lecture 6.1
Gene Duplication
Class Recording 1st October, 2023
Week 12 (Lecture 6.2 DNA Database Searching)
Lecture 6.2 DNA Database Searching
Video Presentation on Lecture 6.2: FASTA
Online class recording | 15th Noember
Week 12 (Lecture 7.1 Importance of Computation in Chemical Industries)
Lecture 7.1 Importance of Computation in Chemical Industries
Video presentation on Lecture 7.1
16th November class |
Quiz Test (Online Mood) || Wait for Announcement
Week 13 (Lecture 10: Computer graphics for Molecular modelling)
Class Lecture Slide on Lecture 8.1: Computer graphics for Molecular modelling
Video Presentation on Lecture 8.1 (Computer graphics for Molecular modelling)
Week 14 (Presentation and Quiz)
Quiz 3 MCQ | Online attempt | 9.00 PM to 9.15 PM
Week 15 (Review Class)
Assignment
Week 16 (Final Exam)
Next
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Course Overview
Sections
Welcome to Introduction to Biology and Chemistry for Computation Theory Course
1
Announcements
Forum
Announcements
Forum
CO-PO, Course Outcome and Contents with Completion Plan
File
Online Class google meeting Link
URL
Week 1: Getting Introduced || Youtube Channel (Faisal Imran) Link || Career Related Discussion
2
Introduction to Biology & Chemistry for Computation by Faisal Imran
Page
Discussion Forum
3
Understanding Bioinformatics
Forum
Week 1 & 2 (Lecture 1.1, 1.2 & 1.3)
4
Lecture 1.1, 1.2 & 1.3
Page
Video Lecture: Introduction to Computational Chemistry
Page
Video Lecture: Introduction to Computational Biology
Page
Demo Quiz || Wait for Announcement
5
First Demo Quiz CSE 115
Week 3 (Lecture 2.1 and Lecture 2.2)
6
Lecture 2.1
Page
Video Lecture 2.1 Role of chemistry in computer science & engineering
Page
Lecture 2.2 Presentation Slide
Page
Video Lecture 2.2 Molecular and Cellular Biology (DNA Replication)
Page
Discussion Forum
7
Regarding DNA Replication
Forum
APPlication Name Assignment 1 | 65-E
Week 4 & 5 (Lecture 3.1 and Lecture 3.2)
8
Presentation Slide on Lecture 3.1
Page
Video Presentation of Lecture 3.1 DNA Sequencing (Sanger Method)
Page
Presentation Slide on Lecture 3.2
Page
Video Presentation on Lecture 3.2 DNA Sequencing (First, Second & Third Generation Sequencing)
Page
Quiz 1 | 65-E
Assignment
Week 7 (Lecture 5.1 and Lecture 5.2)
9
Presentation Slide on Lecture 5.1 & 5.2
Page
Video Presentation on Lecture 5.1 Computational Chemistry Methods (Molecular Mechanics, Molecular Dynamics, Quantum Mechanics)
Page
Video Presentation on Lecture 5.2 Quantum Mechanics, AB Initio Method, Hartree Fock, Density Functional Theory & Semi-Empirical Method
Page
Week 8: Students Discussion & Forum
10
Discussion About Sequence Alignment Technique
Forum
Week 9: Review Class & Mid-Term Examination
11
Attend Review Class
Page
Week 10 (Lecture 4.1 and Lecture 4.2)
12
Presentation Slide on Lecture 4.1
Page
Video Presentation on Lecture 4.1 DNA Sequence Alignment (Needleman-Wunsch)
Page
Video Presentation on Lecture 4.2 DNA Sequence Alignment (Smith-Waterman) Method
Page
Week 10 (Lecture 6.1)
13
Lecture 6.1 Gene Duplication and Read Mapping
Page
Video Presentation on Lecture 6.1
Page
Gene Duplication
Forum
Class Recording 1st October, 2023
URL
Week 12 (Lecture 6.2 DNA Database Searching)
14
Lecture 6.2 DNA Database Searching
Page
Video Presentation on Lecture 6.2: FASTA
Page
Online class recording | 15th Noember
URL
Week 12 (Lecture 7.1 Importance of Computation in Chemical Industries)
15
Lecture 7.1 Importance of Computation in Chemical Industries
Page
Video presentation on Lecture 7.1
Page
16th November class |
URL
Quiz Test (Online Mood) || Wait for Announcement
16
Week 13 (Lecture 10: Computer graphics for Molecular modelling)
17
Class Lecture Slide on Lecture 8.1: Computer graphics for Molecular modelling
Page
Video Presentation on Lecture 8.1 (Computer graphics for Molecular modelling)
Page
Week 14 (Presentation and Quiz)
18
Quiz 3 MCQ | Online attempt | 9.00 PM to 9.15 PM
URL
Week 15 (Review Class)
19
Assignment
Week 16 (Final Exam)
20
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Week 12 (Lecture 6.2 DNA Database Searching)
Lecture 6.2 DNA Database Searching
Lecture 6.2 DNA Database Searching
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DNA Database Searching
● FASTA
Click here to download slide on lecture 6.2
Last modified: Wednesday, 15 May 2024, 9:29 AM
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Announcements
Announcements
CO-PO, Course Outcome and Contents with Completion Plan
Online Class google meeting Link
Introduction to Biology & Chemistry for Computation by Faisal Imran
Understanding Bioinformatics
Lecture 1.1, 1.2 & 1.3
Video Lecture: Introduction to Computational Chemistry
Video Lecture: Introduction to Computational Biology
First Demo Quiz CSE 115
Lecture 2.1
Video Lecture 2.1 Role of chemistry in computer science & engineering
Lecture 2.2 Presentation Slide
Video Lecture 2.2 Molecular and Cellular Biology (DNA Replication)
Regarding DNA Replication
APPlication Name Assignment 1 | 65-E
Presentation Slide on Lecture 3.1
Video Presentation of Lecture 3.1 DNA Sequencing (Sanger Method)
Presentation Slide on Lecture 3.2
Video Presentation on Lecture 3.2 DNA Sequencing (First, Second & Third Generation Sequencing)
Quiz 1 | 65-E
Presentation Slide on Lecture 5.1 & 5.2
Video Presentation on Lecture 5.1 Computational Chemistry Methods (Molecular Mechanics, Molecular Dynamics, Quantum Mechanics)
Video Presentation on Lecture 5.2 Quantum Mechanics, AB Initio Method, Hartree Fock, Density Functional Theory & Semi-Empirical Method
Discussion About Sequence Alignment Technique
Attend Review Class
Presentation Slide on Lecture 4.1
Video Presentation on Lecture 4.1 DNA Sequence Alignment (Needleman-Wunsch)
Video Presentation on Lecture 4.2 DNA Sequence Alignment (Smith-Waterman) Method
Lecture 6.1 Gene Duplication and Read Mapping
Video Presentation on Lecture 6.1
Gene Duplication
Class Recording 1st October, 2023
Video Presentation on Lecture 6.2: FASTA
Online class recording | 15th Noember
Lecture 7.1 Importance of Computation in Chemical Industries
Video presentation on Lecture 7.1
16th November class |
Class Lecture Slide on Lecture 8.1: Computer graphics for Molecular modelling
Video Presentation on Lecture 8.1 (Computer graphics for Molecular modelling)
Quiz 3 MCQ | Online attempt | 9.00 PM to 9.15 PM
Assignment
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